All the publications are available as pdf files upon request.

Five most important publications:

The complete list of my publications:

55. J. Romanski, B. Trzaskowski, P. Piatek, "Selective NaNO2 recognition by a simple heteroditopic salt receptor based on L-ornithine molecular scaffold", Dalton Trans., accepted.

54. S. Yuan. R. Wu, D. Latek, B. Trzaskowski, S. Filipek, "Lipid receptor S1P1 activation scheme concluded from microsecond all-atom molecular dynamics simulations", PLOS Comp. Biol., accepted.

53. B. Trzaskowski, K. Grela, "Structural and mechanistic basis of the fast metathesis initiation by a six-coordinated ruthenium catalyst", Organometallics, 32, 3625-3630 (2013).

52. I. Bouabdallah, R. Touzani, I. Zidane, A. Ramdani, A.F. Jalbout, B. Trzaskowski, "New comparative theoretical calculations of some N,N-bis[(3,5-dimethylpyrazol-1-yl)methyl]phenylamines tripodal ligands", J. Mater. Environ. Sci., 4, 671-674 (2013).

51. D. Latek, B. Trzaskowski, S. Niewieczerzal, P. Miszta, K. Mlynarczyk, A. Debinski, W. Pulawski, S. Yuan, S. Filipek, "Modeling of Membrane Proteins", in: "Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes - from Bioinformatics to Molecular Quantum Mechanics", Springer 2013.

50. R. Berro, A. Yasmeen, R. Abrol, B. Trzaskowski, S. Abi-Habib, A. Grunbeck, D. Lascano, W.A. Goddard, P.J. Klasse, T.P. Sakmar, J.P. Moore, "Use of G-protein coupled and uncoupled CCR5 conformers by CCR5 inhibitor-resistant and -sensitive human immunodeficiency virus type 1 variants", J. Virol., 87, 6569-6581 (2013).

49. K. Zukowska, A. Szadkowska, B. Trzaskowski, A. Pazio, L. Paczek, K. Wozniak, K. Grela, "3-bromopyridine as a sixth ligand in sulfoxide-based hoveyda complexes: A study on catalytic properties", Organometallics, 32, 2192-2198, 2013.

48. R. Abrol, S.-K. Kim, J.K. Bray, B. Trzaskowski, W.A. Goddard, "Conformational Ensemble View of G Protein-Coupled Receptors and the Effect of Mutations and Ligand Binding", Method. Enzymol., 520, 31-48 (2013).

47. D. Latek, A. Modzelewska, B. Trzaskowski, K. Palczewski, S. Filipek, "G Protein-Coupled Receptors - Recent Advances", Acta Biochim. Pol., 59, 515-529 (2012).

46. S. Yuan, U. Ghoshdastider, B. Trzaskowski, A. Debinski, W. Pulawski, R. Wu, V. Gerke, S. Filipek, "The role of water in activation mechanism of human N-formyl Peptide Receptor 1 (FPR1) based on molecular dynamics simulations", PLOS One, 7, e47114 (2012).

45. J. Tan, R. Abrol, B. Trzaskowski, W.A. Goddard, "3D Structure Prediction of TAS2R38 Bitter Receptors Bound to Agonists Phenylthiocarbamide (PTC) and 6-n-Propylthiouracil (PROP)", J. Chem. Inf. Model, 52, 1875-1885 (2012).

44. A. Grunbeck, T. Huber, R. Abrol, B. Trzaskowski, W.A. Goddard, T.P. Sakmar, "Genetically Encoded Photo-cross-linkers Map the Binding Site of an Allosteric Drug on a G Protein-Coupled Receptor", ACS Chem. Biol., 7, 967-972 (2012)

43. B. Trzaskowski, D. Latek, S. Yuan, U. Ghoshdastider, A. Debinski, S. Filipek, "Action of molecular switches in GPCRs - theoretical and experimental studies", Curr. Med. Chem., 19, 1090-1109 (2012).

42. I. Kufareva, M. Rueda, V. Katritch, B. Trzaskowski and other GPCR Dock 2010 participants, R.C. Stevens, R. Abagyan, "Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment", Structure, 19, 1108-1112 (2011).

41. W.A. Goddard, S.-K. Kim, Y. Li, B. Trzaskowski, A. Griffith, R. Abrol, "Predicted 3D Structures for Adenosine Receptors Bound to Ligands; Comparison to the Crystal Structure", J. Struct. Biol., 170, 10-20 (2010).

40. J.S. Castro, P.A Deymier, B. Trzaskowski, J. Bucay, "Heterogeneous and homogeneous nucleation of Taxol. crystals in aqueous solutions and gels: effect of tubulin proteins", Colloid. Surface. B, 76, 199-206 (2010).

39. M. Michino, E. Abola, B. Trzaskowski and other GPCR Dock 2008 participants, C.L. Brooks III, J.S. Dixon, J. Moult, R.C. Stevens, "Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008", Nat. Rev. Drug. Discov., 8, 455-463 (2009).

38. B. Trzaskowski, L. Adamowicz, "Chloromethane and dichloromethane decompositions inside nanotubes as models of reactions in confined space", Theor. Chem. Acc., 124, 95-103 (2009).

37. J.S. Castro, B. Trzaskowski, P.A. Deymier, J. Bucay, L. Adamowicz, J.B. Hoying, "Binding affinity of fluorochromes and fluorescent proteins to Taxol crystals", Mat. Sci. Eng. C - Bio. S., 29, 1609-1615 (2009).

36. B. Trzaskowski, F. Leonarski, A. Les, L. Adamowicz, "Altering the orientation of proteins on self-assembled monolayers, a computational study", Biomacromolecules, 9, 3239-3245 (2008).

35. B. Trzaskowski, A.F. Jalbout, A.J. Hameed, A. de Leon, A.H. Hessa, "1-(para-substituted phenyl diazenyl) pyrrolidinofullerenes. A Theoretical Study", J. Comput. Theor. Nanosci., 5, 2210-2215 (2008).

34. A.F. Jalbout, F.F. Contreras-Torres, A.J. Hameed, B. Trzaskowski, V.A. Basiuk, "Structure and Properties of a Series of Arylselenium [60]Fulleropyrrolidine Derivatives", J. Comput. Theor. Nanosci., 5, 554-562 (2008).

33. B. Trzaskowski, L. Adamowicz, P.A. Deymier, "A theoretical study of zinc(II) interactions with amino acid models and peptide fragments", J. Inorg. Biol. Chem., 13, 133-137 (2008).

32. A.F. Jalbout, B. Trzaskowski, "The origin of the exact energy expressions in density functional theory", Khimiya/Chemistry, 16, 453-472 (2007).

31. A.F. Jalbout, B. Trzaskowski, Y. Xia, Y. Li, "Geometry predictions, vibrational analysis and IR intensities of XH3Y (X=C, Si, Ge, Y=F, Cl, Br) calculated by hybrid density functional theory, MP2 and MP4 methods", Acta Chim. Slov., 54, 769-777 (2007).

30. H.A. Witek, B. Trzaskowski, E. Malolepsza, K. Morokuma, L. Adamowicz, "Computational study of molecular properties of aggregates of C60 and (16,0) zigzag nanotube", Chem. Phys. Lett., 446, 87-91 (2007).

29. B. Trzaskowski, A.F. Jalbout, L. Adamowicz, "Functionalization of carbon nanocones by free radicals. A theoretical study", Chem. Phys. Lett., 444, 314-318 (2007).

28. B. Trzaskowski, A. Les, A.F. Jalbout, L. Adamowicz, P.E.M. Siegbahn, "Theoretical modeling of the nonenzymatic solvolysis of CMP-NeuAc in an acidic environment", J. Mol. Struct. THEOCHEM, 820, 90-97 (2007).

27. A.F. Jalbout, A. De Leon, L. Adamowicz, B. Trzaskowski, E.C.M. Chen, C. Herder, E.S. Chen, "Theoretical, Empirical and Experimental Electron Affinities of SF6: Solving the Density Functional Enigma", J. Theor. Comput. Chem., 6, 747-759 (2007).

26. M. Pavanello, A.F. Jalbout, B. Trzaskowski, L. Adamowicz, "Fullerene as an Electron Buffer: Charge Transfer in Li@C60", Chem. Phys. Lett., 442, 339-343 (2007).

25. A.F. Jalbout, A.J. Hameed, B. Trzaskowski, "Computational note on thermochemical stability of the HO2-CHClO complex", J. Mol. Struct. THEOCHEM, 816, 1-3 (2007).

24. B. Bennani, A.F. Jalbout, B.F. Baba, N.B. Larbi, A. Boukir, A. Kerbal, M. Mimouni, T.B. Hadda, B. Trzaskowski, "Synthesis of New Spiro-[isothiochromene-3,5'-isoxazolidin] -4(1H)-ones", J. Heterocyclic Chem., 44, 711-716 (2007).

23. A.F. Jalbout, M.D. Abul Haider Shipar, B. Trzaskowski, L. Adamowicz, "Formation of glyoxal in hydroxyacetaldehyde and glycine nonenzymatic browning Maillard reaction: A computational study", Food Chem., 103, 359-368 (2007).

22. B. Trzaskowski, R. Guzman, L. Adamowicz, "Cyclododecane and cyclotridecane complexes with cobalt as potent histidine chelators; a theoretical study", Polyhedron, 26, 2477-2481 (2007).

21. A.F. Jalbout, B. Trzaskowski, E.C.M. Chen, E.S. Chen, L. Adamowicz, "Electron affinities, gas phase acidities, and potential energy curves: Benzene", Int. J. Quantum Chem., 107, 1115-1125 (2007).

20. A.F. Jalbout, B. Trzaskowski, Y. Xia, Y. Li. X. Hu, H. Li, A. El-Nahas, L. Adamowicz, "Structures, Stabilities and Tautomerizations of Uracil and Diphosphouracil Tautomers", Chem. Phys., 332, 152-161 (2007).

19. A.F. Jalbout, A.J. Hameed, B. Trzaskowski, "Study of the structural and electronic properties of 1-(4, 5 and 6-selenenyl derivatives-3-formyl-phenyl) pyrrolidinofullerenes", J. Organomet. Chem., 692, 1039-1047 (2007).

18. A.J. Hameed, A.F. Jalbout, B. Trzaskowski, "Theoretical study of molecular and electronic structure of 2-Se-(2-methyl-2propenyl)-1-benzoic acid", Int. J. Quantum Chem., 107, 152-158 (2007).

17. B. Trzaskowski, P.A. Deymier, L. Adamowicz, "Metallization of nanobiostructures; a theoretical study of copper nanowires growth in microtubules", J. Mater. Chem., 16, 4649-4656 (2006).

16. B. Trzaskowski, A.F. Jalbout, L. Adamowicz, "Molecular Dynamics studies of protein-fragment models encapsulated into carbon nanotubes", Chem. Phys. Lett., 430, 97-100 (2006).

15. A.F. Jalbout, B. Trzaskowski, A.J. Hameed, "Theoretical Investigation of the electronic structure of 1-(3,4; 3,5 and 3,6-bis-selenocyanato-phenyl) pyrrolidinofullerenes", J. Organomet. Chem., 691, 4589-4594 (2006).

14. I. Bouabdallah, I. Zidane, R. Touzani, A. Ramdani, A.F. Jalbout, B. Trzaskowski, "New 1-(ethyl-ethanoate-yl)-5,5'-diisopropyl-3,3'-bipyrazole", Molbank, M491 (2006).

13. I. Bouabdallah, I. Zidane, R. Touzani, A. Ramdani, A.F. Jalbout, B. Trzaskowski, "New 1-(4-nitrophenyl)-5,5'-diisopropyl-3,3'-bipyrazole", Molbank, M490 (2006).

12. A.A. Jarrahpour, A.F. Jalbout, J.M. Brunei, C. Loncle, S. Rezaei, B. Trzaskowski, "Synthesis, Physical Characterization, Antibacterial and Antifungal Activities of 2-((E)-1-(2-((E)-1-(2-Hydroxyphenyl)ethylideneamino) phenylamino) ethyl) phenol", Molbank, M489 (2006).

11. A.F. Jalbout, A.A. Jarrahpour, J.M. Brunel, C. Salmi, S. Rezaei, B. Trzaskowski, "Synthesis, Physical Characterization, Antibacterial and Antifungal activities of a novel bis(3-((E)-1-(2-hydroxyphenyl) ethylideneamino)phenyl)methanone", Molbank, M484 (2006).

10. B. Trzaskowski, S.G. Stepanian, A. Les, P.A. Deymier, R. Guzman, L. Adamowicz, "Iminodiacetate as a chelating agent for histidine; a theoretical study", J. Comput. Theor. Nanosci., 3, 775-784 (2006).

9. A.F. Jalbout, X.-H. Li, B. Trzaskowski, H. Raissi, "Experimental and theoretical Investigation of the IR spectra and thermochemistry of four isomers of 2-N,N-dimethylaminecyclohexyl 1-N',N'-dimethylcarbamate", Eclet. Quim., 31, 53-62 (2006).

8. A.A. Jarrahpour, A.F. Jalbout, S. Rezaei, B. Trzaskowski, "Synthesis and Physical Characterization of 2-((E)-1-(3-((E)-1-(2-hydroxyphenyl) ethylideneamino)-2-methylphenylimino)ethyl)phenol", Molbank, M455 (2006).

7. S.G. Stepanian, B. Trzaskowski, P.A. Deymier, R. Guzman, L. Adamowicz, "Selectivity of the Chelator-Protein Interactions: A High Level Quantum Chemistry Study", J. Comput. Theor. Nanosci., 3, 78-87 (2006).

6. B. Trzaskowski, A. Les, L. Adamowicz, "Theoretical Approach Towards the Mechanism of Enzymatic Reaction Catalyzed by Beta-D-Galacoside Alpha-2,3,-Sialyltransferase", Ann. Pol. Chem. Soc., 1, 688-692 (2005).

5. B. Trzaskowski, F. Leonarski, A. Les, L. Adamowicz, "Modeling Tubulin at Interfaces. Immobilization of Microtubules on Self-Assembled Monolayers", J. Phys. Chem. B, 109, 17734-17742 (2005).

4. B. Trzaskowski, A. Les, L. Adamowicz, P.A. Deymier, R. Guzman, S.G. Stepanian, "Multilevel Quantum Chemistry Approach to the Development of a Database of the SAM-Ligand-Metal Ion-Protein Interactions", J. Comput. Theor. Nanosci., 2, 456-468 (2005).

3. B. Trzaskowski, A. Les, L. Adamowicz, "Theoretical Investigation of Water/Methanol Attack on Sialic Acid Oxocarbenium Ion", Ann. Pol. Chem. Soc., 3, 473-476 (2004).

2. B. Trzaskowski, A. Les, L. Adamowicz, J. Gervay-Hague, "Design of Candidates for Inhibitors of Solvolysis Catalyzed by Sialyl Transferase", Ann. Pol. Chem. Soc., 1, 125-132 (2003).

1. B. Trzaskowski, A. Les, L. Adamowicz, "Modelling of Octahedral Manganese II Complexes with Inorganic Ligands: a Problem with Spin-States", Int. J. Mol. Sci., 4, 503-511 (2003).


PhD thesis: "Theoretical model of the nonenzymatic and enzymatic solvolysis of cytydine 5'-monophospho-N-acetylneuraminic acid", Warsaw University (2005).

Master's thesis: "Octahedral manganese complexes - an introduction to the modeling of inhibitors of the small cell lung cancer" (in polish), Warsaw University (2001).