Next:
List of Figures
Up:
Dynamic and Stochastic Protein
Previous:
Thesis Abstract
Contents
Acknowledgements
Thesis Abstract
Contents
List of Figures
List of Tables
Chapter 1
Protein Simulations
Molecular Mechanics
Forcefields
Energy Minimization
Molecular Dynamics
Monte Carlo
References
Chapter 2
Introduction
Methodology
Results
Timing
Energy Fluctuations
Dihedral Distributions
Conclusions
Leapfrog Verlet for Internal Coordinates
Chapter 3
Introduction
Methodology
Results
Conclusions
Chapter 4
Introduction
Methodology
The Protein Database Subset
Backbone (
) Probability Grids
Sidechain (
) Probability Grids
Note on Computations
Conformations of Met-Enkephalin
Conclusions
Chapter 5
Introduction
Methodology
General Methodology
Variables
Results
Crambin
Larger Proteins
The C
Forcefield
Conclusions
Chapter 6
Introduction
Methodology
Antibody Hypervariable Loops
Conclusions
About this document ...
