Lucas (2/13/2009)



  • "First-principles based multiparadigm, multiscale modeling and simulation", Invited Plenary at the II Colombian Computation Congress, April 20-22, Bogota, Colombia.
  • "Computational Nanotechnology in Predicting Bio-Material Properties", Invited Plenary at the Converging Technologies Forum 2007: NBICs Health and Society, January 25-26, Barcelona, Spain.



  • (Text Book) Computational Robotics: theory and algorithms for control and simulation (Spanish). Available for registered undergraduate/graduate students by request.  See sample Chapters:

  • Ramos, N., Jaramillo-Botero, A. "Reduced Dynamics Complexity of Robot Manipulators via Tensor Analysis of its Joint Space Mass Operator," Epiciclos, Vol 4, No. 1, December 2005


  • Jaramillo-Botero, A. "Molecular Nanomanipulator Dynamic Design Criteria", Dekker Encyclopedia of Nanoscience and Nanotechnology. 1st Ed. New York : Marcel Dekker Publ., 2004.
  • Jaramillo-Botero, A., Matta, A., Correa, JF, Perea, W. Software platform for robot modeling and simulation, Vol. 3, No. 1, December 2004.
  • "Computational Nanotechnology in the Design of Nanoscale Molecular Positional Devices", NASA Jet Propulsion Laboratory Seminar, Pasadena, California (US) November 23, 2004.
  • "Molecular Nanotechnology: A Computational Approach", Plenary II IEEE International Congress for the Andean Region (Andescon 2004), Bogota (Colombia), September 2004.

Tomas (2/9/2004)


  • "Molecular Mechanosynthesis", Plenary VI National Congress of the Sugar Cane Technical Association Congreso, Cali, Colombia, 2003.
  • "Nanoscale Manipulator Design Criteria", Computational Nanotechnology Session, Proceedings American Chemical Society (ACS) National Meeting (invited talk), New Orleans, Louisiana, March 23-27, 2003.
  • "Nanoscale Molecular Manipulator Design Criteria for Reduced Constrained Dynamics" (Nanotechnology session) The 7th World Multiconference on Systemics, Cybernetics and Informatics (invited talk), Orlando, Florida, 2003.


  • Jaramillo-Botero, A. and Crespo, A. "A Unified Formulation For Massively Parallel Rigid Multibody Dynamics Of O(Log2 N) Computational Complexity", Journal of Parallel and Distributed Computing, Academic Press, Vol. 62, No. 6, June 1, 2002.
  • Jaramillo-Botero, A., "Nanotechnology: scientific and engineering principles", (Spanish), Science and Innovation Magazine, ACAC (Colombian Association for the Advancement of Science), Vol. 10, No. 2, August, 2002.
  • Jaramillo-Botero, A., "Design Theory of Reduced Complexity Robotic Manipulators", Epiciclos (Spanish Journal), Vol. 1, No.1, 2002.
  • "Massively Parallel Constrained Dynamics for MD Simulation", NANO Seminar Series, Institute of Pure and Applied Mathematics, UCLA, Los Angeles, California (US), 2002.


Lucas (1/17/2000)


  • Fijany, A., Jaramillo-Botero, A., Cagin, T., and Goddard, W.A. III, "A Fast Algorithm for Massively Parallel, Long Term Simulations of Complex Molecular Dynamics Systems", pp 505-515 (1998), Parallel Computing: Fundamentals, Applications and New Directions, Eds. E. H. D'Hollander, G. R. Joubert, F. J. Peters and U. Trottenberg.
  • Fijany, A., Cagin, T., A., Jaramillo-Botero, and Goddard, W. A. III. Novel Algorithms for massively parallel, long term simulation of molecular dynamics systems, Advances in Engineering Software, 29, 441-450 (1998).
  • Cagin, T., Jaramillo-Botero, A., Gao, G., W. A. Goddard, III, Molecular Mechanics and Molecular Dynamics Analysis of Drexler-Merkle Gears and Neon Pump, Nanotechnology 9 (3), 143-152 (1998).
  • Massively Parallel Algorithms for Long-term Simulations of Large-scale Molecular Systems, Universidad Politecnica de Valencia, Doctoral Thesis, (spanish) ISBN: 958-8162-60-2, 1998.


  • Fijany, A., T. Cagin, A. Jaramillo-Botero, S. Gulati, and W.A. Goddard,"Novel Algorithms for Massively Parallel, Long-Term, Simulation of Molecular Dynamics Systems," 4th NASA National Symposium on Large-Scale Analysis and Design on High-Performance Computers and Workstation, Williamsburg, VA, October 1997.
  • Fijany, A., T. Cagin, A. Jaramillo-Botero, and W.A. Goddard, "Massively Parallel Constraint Force Algorithm for MD Simulation of Polymers and Dendrimers," Presented at the 1997 American Physical Society (APS) Int. Conf. on Computational Physics (PC97), Santa Cruz, CA, Aug. 1997.
  • Fijany, A. A. Jaramillo -Botero, T. Cagin, and W.A. Goddard, "A Fast Algorithm for Massively Parallel, Long-Term, Simulation of Complex Molecular Dynamics Systems," Proceedings Parallel Computing 97 (PARCO 97), Bonn, Germany, September 1997.
  • Fijany, A., T. Cagin, A. Jaramillo -Botero, T. Coley, and W.A. Goddard, "A Massively Parallel Algorithm for Solution of Constrained Equations of Motion with Application to Large-Scale Long-Time Molecular Dynamics Simulations," Presented at the 2nd Parallel Computational Chemistry Symposium, American Chemistry Society (ACS), San Francisco, CA, April 1997.
  • Fijany, A., T. Cagin, A. Jaramillo -Botero, and W.A. Goddard,"A Massively Parallel Algorithm for Solution of Constrained Equations of Motion in Molecular Dynamics," Presented at the American Physical Society Meeting, Kansas City, MO, March 1997.



  • Jaramillo-Botero, A., and Miyake, Y. "A Parallel Architecture for Achieving High Speed Fuzzy Control under a PC ISA Platform", Fuzzy IEEE Micro, December 1995.
  • Jaramillo-Botero, A., and Miyake, Y. "Neuro-Fuzzy Perception and Control for Robots". Proceedings 11th ISPE/IEE/IFAC/ International Conference on CAD/CAM, Robotics, & Factories of the Future, November 1995.

- 1995

  • Jaramillo-Botero, A. "Computational Intelligence: Introduction and Applications in Vision and Senso-Motor Control", (Spanish) Colombia, Science and Technology Magazine, Vol. 12 No. 4, October-December, 1994.
  • Jaramillo-Botero, A., and Miyake, Y. "A High Speed Parallel Architecture for Fuzzy Inference and Fuzzy Control of Multiple Processes". Proceedings IEEE World Congress on Computational Intelligence. USA. June 1994.
  • Jaramillo-Botero, A. "Artificial Neural Networks and Fuzzy Logic in Industrial Applications". Proceedings 1st National Symposium on Automation, Cali, Colombia, November 1993. (plenary).
  • Jaramillo-Botero, A., and Kazuo, K. "A Fuzzy Artificial Neural Network for Pattern Classification". Presented at the 1st IS&T Color Imaging Conference. Phoenix, Arizona, USA. November 1993.
  • RISCy Processing Element for Loosely Coupled Multiprocessor Systems. State University of New York, Master's Thesis, Binghamton, 1989.


  • "Molecular origin of enhanced mechanical strength in double network polymer hydrogels", Jaramillo-Botero, A., Qi, A. and Goddard, WA III. Nature Materials.
  • "Silica surface reactions with H2, N2 and O2 using reactive molecular dynamics", Soules, T.F., Jaramillo-Botero, A., Xiao, H., Matthews, M.J., Goddard III, W.A, and Elhadj, S., Journal of Non-crystalline Solids. 
  • "Carbon Phases Under Extreme Conditions of Temperature and Pressure during Shock Compression", Qi, A., Su, J., Jaramillo-Botero, A., Zybin, S.V., and Goddard III, W.A., Phys. Rev. B. 
  • "Complementary Field Effect Nanopore Device for Charge-tagged Nucleic Acid Sequence Identification", Jaramillo-Botero, A., Cvicek, V., Goddard III, W.A. Nanotechnology. 
  • "The percolation limit near the Flory-Stockmayer Transition in Polymer Hydrogel Networks", Blanco, M., Jaramillo-Botero, A., Goddard, WA III. Journal of Physical Chemistry






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