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Year
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SELECTED REFEREED
PUBLICATIONS AND INVITED TALKS
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2022
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- Wioleta Białobrzeska,
Mateusz Ficek, Bartłomiej Dec,
Silvio Osella, Bartosz Trzaskowski,
Andres Jaramillo-Botero, Mattia Pierpaoli, Michał
Rycewicz, Yanina Dashkevich, Tomasz Łęga,
Natalia Malinowska, Zofia
Cebula, Daniel Bigus,
Daniel Firganek, Ewelina Bięga, Karolina Dziąbowska,
Mateusz Brodowski, Marcin Kowalski, Mirosława
Panasiuk, Beata Gromadzka,
Sabina Żołędowska, Dawid Nidzworski, Krzysztof Pyrć, William A
Goddard III, Robert Bogdanowicz, "Performance of electrochemical immunoassays for
clinical diagnostics of SARS-CoV-2 based on selective nucleocapsid N
protein detection: Boron-doped diamond, gold and glassy carbon
evaluation", Biosensors and Bioelectronics, 209, Elsevier, 2022
- Maria Camila Ayala, Lizbeth Lorena
Lopez, Andres Jaramillo-Botero, Drochss
Valencia, "Electrochemical modified electrode with bismuth
film for ultrasensitive determination of aluminum (iii)",
Journal of Electroanalytical Chemistry, Elsevier, 2022
- Juan M Marmolejo-Tejada,
Jaime Velasco-Medina, Andres Jaramillo-Botero*, "Graphene Nanoribbon Devices: Advances in
Fabrication and Applications", Sub-Micron Semiconductor Devices, CRC Press, 2022
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2021
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- JPL Technology Highlights 2021, Cover page and story, Simulating Signs of Life
in an Icy Veil, Jet Propulsion Laboratory, 2021
- Sally Burke, Karl Hanold, Robert Continetti, Morgan EC Miller, Sarah E
Waller, Andres Jaramillo-Botero, Robert P Hodyss,
Michael Malaska, Amy E Hofmann, Jonathan I Lunine, Morgan L Cable, "Studies of Molecular Fragmentation of Ice-Entrained
Organics After Hypervelocity Impact", AGU Fall Meeting 2021
- Jessica A Schulze, Dundar E Yilmaz, Andres Jaramillo-Botero, Adri CT
van Duin, Morgan EC Miller, Sarah E Waller,
Robert P Hodyss, Michael Malaska,
Amy E Hofmann, Sally Burke, Robert Continetti, Jonathan I Lunine, Morgan L Cable, "The effect of salts in the hypervelocity-induced
fragmentation of amino acids embedded in icy clusters", AGU
Fall Meeting 2021, AGU, 2021
- Carlos Andres Perez-Lopez, Jaime
Andres Perez-Taborda, Cilene
Labre, Juan Manuel Marmolejo-Tejada,
Andres Jaramillo-Botero, Alba Avila, "ZnO/PDMS nanocomposite generator: Interphase
influence in the nanocomposite electro-mechanical properties and output
voltage", Energy Reports, Elsevier, 7, 2021
- Sammy A Perdomo, Juan M Marmolejo-Tejada, Andres Jaramillo-Botero, "Bio-Nanosensors:
Fundamentals and Recent Applications", Journal of The
Electrochemical Society, IOP Publishing, 168, 10, 2021
- Sammy A Perdomo, Viviana Ortega,
Andres Jaramillo-Botero, Nelson Mancilla, Jose
Hernando Mosquera-DeLaCruz, Drochss Pettry Valencia,
Mauricio Quimbaya, Juan David Contreras, Gabriel Esteban Velez, Oscar A Loaiza, Adriana Gomez, Jhonattan de la Roche, "SenSARS: A Low-Cost Portable Electrochemical System
for Ultra-Sensitive, Near Real-Time, Diagnostics of SARS-CoV-2
Infections", IEEE Transactions on Instrumentation and
Measurement, 70, 1-10, IEEE, 2021
- Mehdi Sahihi,
Andres Jaramillo-Botero, William A Goddard III, Fahmi Bedoui, "Interfacial Interactions in a Model Composite
Material: Insights into α
→ β Phase Transition of
the Magnetite Reinforced Poly(Vinylidene Fluoride) Systems by All-Atom
Molecular Dynamics Simulation", The Journal of Physical
Chemistry C, American Chemical Society, 125, 39, 2021
- Juan M Marmolejo-Tejada,
Jhonattan De La Roche-Yepes, Carlos A
Perez-Lopez, Jaime A Perez Taborda, Alba
Avila, Andres Jaramillo-Botero*, "Understanding the Origin of Enhanced Piezoelectric
Response in PVDF Matrices with Embedded ZnO
Nanoparticles, from Polarizable Molecular Dynamics Simulations",
Journal of Chemical Information and Modeling, American Chemical Society,
61, 9, 2021
- Fahmi Bedoui,
Andres Jaramillo-Botero, Tod A Pascal, William A Goddard III, "Focus on the deformation mechanism at the
interfacial layer in nano-reinforced polymers: A molecular dynamics
study of silica-poly (methyl methacrylate) nano-composite",
Mechanics of Materials, 159, Elsevier, 2021
- Juan M Marmolejo-Tejada,
Andres Jaramillo-Botero, "Four-terminal graphene nanoribbon sensor devices:
In-silico design and characterization", Computational Materials
Science, Elsevier, 196, 2021
- Morgan Cable, Sarah E Waller, Rob Hodyss, Amy E Hofmann, Michael J Malaska,
Robert E Continetti, Andres Jaramillo-Botero, Bernd Abel, Frank Postberg, Morgan EC Miller, Sally Burke, Anton Belousov, Fabian Klenner,
Nick Tallarida, James Lambert, Steve Fuerstenau, Zach Ulibarri, Sean Hsu, Susan Lang,
Ralf Srama, Sascha Kempf,
Everett L Shock, Linda J Spilker, John Robert Brucato, "Plume Grain Sampling at Hypervelocity: Implications
for Astrobiology Investigations", Bulletin of the American
Astronomical Society, 53, 4, 2021
- Andres Jaramillo-Botero*, Morgan L
Cable, Amy E Hofmann, Michael Malaska, Robert Hodyss, Jonathan Lunine, "Understanding hypervelocity sampling of
biosignatures in space missions", Astrobiology, 21, 4, 2021
- SE Waller, ME Miller, AE Hofmann,
RP Hodyss, ML Cable, MJ Malaska,
NR Tallarida, JL Lambert, A Jaramillo-Botero,
S Burke, RE Continetti, B Abel, F Postberg, JI
Lunine, "Hypervelocity Plume Sampling: Experimental Efforts
and Astrobiology Implications", 52nd Lunar and Planetary
Science Conference, 2548, 1129, 2021
- SE Burke, MEC Miller, RE
Continetti, K Hanold, SE Waller, A
Jaramillo-Botero, RP Hodyss, MJ Malaska, AE Hofmann, B Abel, F Postberg,
JI Lunine, ML Cable, "The Chemical Effects of Hypervelocity Impact:
Implications for Ocean Worlds Plume Sampling Schemes", 52nd
Lunar and Planetary Science Conference, 2548, 2063, 2021
- Chengyang Jiang, William A Goddard III,
Andres Jaramillo-Botero, Qisheng John Ma, "Robust
Molecular Predictive Methods for Novel Polymer Discovery and
Applications", DOE-SGTC-17710, Sheeta
Global Technology Corp, 2021
- Mei Zheng, Andres
Jaramillo-Botero*, Xue-hai Ju, William A
Goddard, "Coarse-grained force-field for large scale
molecular dynamics simulations of polyacrylamide and polyacrylamide-gels
based on quantum mechanics", Physical Chemistry Chemical
Physics, 23, 18, Royal Society of Chemistry, 2021
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2020
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- Sarah E Waller, Andres
Jaramillo-Botero, Morgan EC Miller, Sally Burke, Robert Continetti,
Robert P Hodyss, Michael Malaska,
Amy Hofmann, Bernd Abel, Frank Postberg,
Jonathan I Lunine, Morgan L Cable, "Hypervelocity Sampling of the Enceladus Plume:
Implications for Astrobiology Investigations", AGU Fall Meeting
Abstracts, P001-05, 2020
- Andres Jaramillo-Botero*, Amy
Hofmann, Michael Malaska, Robert P Hodyss, Jonathan I Lunine,
Sarah E Waller, Morgan EC Miller, Sally Burke, Robert Continetti, Bernd
Abel, Frank Postberg, Morgan L Cable, "Understanding hypervelocity sampling of ice-borne
biosignatures in space missions", AGU Fall Meeting Abstracts,
P003-0012, 2020
- Sally Burke, Morgan EC Miller,
Robert Continetti, Sarah E Waller, Andres Jaramillo-Botero, Robert P Hodyss, Michael Malaska,
Amy Hofmann, Bernd Abel, Frank Postberg,
Jonathan I Lunine, Morgan L Cable, "Characterization of the High Velocity Impact
Phenomena of Small Water-Ice Particles", AGU Fall Meeting
Abstracts, A181-0009, 2020
- Julian D Colorado, Natalia Cera-Bornacelli, Juan S Caldas, Eliel Petro, Maria C
Rebolledo, David Cuellar, Francisco Calderon,
Ivan F Mondragon, Andres Jaramillo-Botero, "Estimation of nitrogen in rice crops from
UAV-captured images", Remote Sensing, 12, 20, MDPI, 2020
- Julian D Colorado, Francisco
Calderon, Diego Mendez, Eliel Petro, Juan P Rojas, Edgar S Correa, Ivan
F Mondragon, Maria Camila Rebolledo, Andres
Jaramillo-Botero, "A novel NIR-image segmentation method for the
precise estimation of above-ground biomass in rice crops", PloS one, 15, 10, 2020
- A Belousov,
M Miller, R Continetti, S Madzunkov, J Simcic, D Nikolic, M Malaska,
R Hodyss, S Waller, J Lambert, A
Jaramillo-Botero, F Maiwald, M Cable, "Laboratory Simulations of Enceladus Plume for
Fly-By Mass Spectrometery Validation",
51st Annual Lunar and Planetary Science Conference, 2326, 1597, 2020
- Marmolejo, J.M. and Jaramillo-Botero*, A. "Effect of surface oxidation on the electronic
transport properties of phosphorene gas sensors: a computational study",
RSC advances, 10, 12, 2020
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2019
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-
Morgan EC Miller, Robert Hodyss, Michael Malask, Amy Hofmann, Sarah Waller, Anton Belousov, James Lambert, Stojan Madzunkov,
Murray Darrach, Andres Jaramillo-Botero,
Morgan Cable, Robert Continetti, "Hypervelocity Enceladus Ice Grain Analogue
Production with the Aerosol Impact Spectrometer", EPSC-DPS
Joint Meeting 2019
- Tao Cheng, Andres Jaramillo-Botero,
Qi An, Daniil V Ilyin, Saber Naserifar, William A Goddard III, "First principles-based multiscale atomistic methods
for input into first principles nonequilibrium transport across
interfaces", Proceedings of the National Academy of Sciences,
116, 37, 2019
- Bartłomiej Dec, Michał Sobaszek, Andres Jaramillo-Botero, William Andrew
Goddard III, Robert Bogdanowicz, "Ligand-Modified Boron-Doped Diamond Surface: DFT
Insights into the Electronic Properties of Biofunctionalization",
Materials, 12, 18, MDPI, 2019
- Andres Jaramillo-Botero*, Morgan L
Cable, Amy Hofmann, Robert P Hodyss, Michael Malaska, "Hypervelocity impact-induced fragmentation for
different amino/fatty acids of interest in Enceladus' plume",
2019 Astrobiology Science Conference, AGU, 2019
- Andres Jaramillo-Botero}, Ravinder
Abrol, Adri van Duin,
William A Goddard III, "Multiscale-Multiparadigm Modeling and Simulation of
Nanometer Scale Systems and Processes for Nanomedical Applications",
Nanomedicine, Jenny Stanford Publishing, 1st Edition, 2019, ISBN
9780429065767
- Adrian Nosek,
Robert Bogdanowicz, Mateusz Ficek, Michal Sobaszek,
Lukasz Golunski, Jakub Karczewski,
Andres Jaramillo-Botero, William Goddard, Marc Bockrath,
Tadeusz Ossowski, "Electronic Transport Studies of Boron-Doped
Diamond-on-Graphene Heterostructures", APS March Meeting
Abstracts, 2019
- Robert Bogdanowicz, Mateusz Ficek,
Michał
Sobaszek, Adrian Nosek,
Łukasz Gołuński, Jakub Karczewski, Andres Jaramillo‐Botero, William A Goddard III, Marc Bockrath, Tadeusz Ossowski,
"Growth and isolation of large area boron‐doped
nanocrystalline diamond sheets: a route toward Diamond‐on‐Graphene
heterojunction", Advanced Functional Materials, 29, 3, 2019
- Marmolejo, J.M. and Jaramillo-Botero*, A.
"Partially-oxidized
phosphorene sensor for the detection of sub-nano Molar concentrations of
nitric oxide: A first-principles study", Accepted
Physical Chemistry Chemical Physics Journal, Royal Chemical Society,
2019, DOI: 10.1039/C9P03912K
- Jaramillo-Botero*, A.,Cable, M.L., Hofmann, A., Malaska,
M., Hodyss, R.P., Hypervelocity
impact-induced fragmentation for different amino/fatty acids of interest
in Enceladus' plume, Astrobiology Science Conference,
Seattle, WA, 6/2019
- Jaramillo-Botero*, A., Marmolejo-Tejada, J.M., All-Armchair Graphene
Nanoribbon Field Effect Uriding Phosphate
Glucose Sensor: First-Principles In-Silico Design and Characterization,
IEEE Sensors, DOI 10.1109/JSEN.2019.2896448
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2018
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- Bogdanowicz, R., Ficek,
M., Sobaszek, M., Nosek,
A., Gołuński, L., Karczewski, K, Jaramillo-Botero, A., Goddard III,
W.A., Bockrath, M., and Ossowski,
T., Growth and Isolation of
Large Area Boron-Doped Nanocrystalline Diamond Sheets: A Route toward
Diamond-on-Graphene Heterojunction, Adv. Funct.
Mater. 2018, 1805242
- Cheng, T., Jaramillo-Botero, A.,
An, Q., Ilyin, D.V., Naserifar,
S., Goddard III, W.A., First Principles Based
Multiscale Atomistic Methods for Input into First Principles
Non-Equilibrium Transport Across Interfaces, Special issue on
Interfaces and Mixing Nonequilibrium Transport across the Scales,
Proceedings of the National Academy of Science (PNAS), August 3, 2018.
201800035.
- Zhou, T., Zybin,
S.V., Goddard III, W.A., Cheng, T., Naserifar,
S., Jaramillo-Botero, A, and Huang, F.L., Predicted Detonation
Properties at the Chapman-Jouguet State for
Proposed Energetic Materials (MTO and MTO3N) from Combined ReaxFF and Quantum Mechanics Reactive Dynamics,
Phys. Chem. Chem. Phys., 2018,20, 3953-3969, DOI: 10.1039/C7CP07321F
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2017
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- Nidzworski, D., Siuzdak,K.,
Niedziałkowski, P., Bogdanowicz*,
R., Sobaszek, M, Ryl,
J., Weiher, P., Sawczak,
M., Wnuk, E., Goddard, W.A.,
Jaramillo-Botero*, A, and Ossowski, T. "A novel ultrasensitive
biosensor for influenza virus detection", Accepted in
Scientific Reports (Nature group), Nov 2017
- Wang, N., Peng, J., Pang*, A.,
He*, T., Du, F., Jaramillo-Botero*, A. "Thermodynamic
Simulation of the RDX-Aluminum Interface Using Reactive Molecular
Dynamics," Accepted Journal of Physical Chemistry C, May
13, DOI: 10.1021/acs.jpcc.7b03108, 2017
- Hajilar, S, Shafei*,
B., Cheng, T., Jaramillo-Botero*, A. "Reactive Molecular
Dynamics Simulations to Understand Mechanical Response of Thaumasite under Temperature and Strain Rate Effects",
Accepted in Journal of Physical Chemistry A, May 22, DOI:
10.1021/acs.jpca.7b-2824, 2017
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2016
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2015
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- Darrach, M., Madzunkov,
S., Schaefer, R., Nikolic, D., Simcic, J.,
Kidd, R., Neidholdt, E., Pilinski,
M., Jaramillo-Botero, A., Farley, K., "The Mass Analyzer for
Real-time Investigation of Neutrals at Europa (MARINE),"
Aerospace Conference, 2015 IEEE , vol., no., pp.1,13, 7-14 March 2015 doi: 10.1109/AERO.2015.7119017
- Jaramillo-Botero, A,
"Large-Scale Quantum Electron Dynamics", Invited talk,
Workshop on Advanced Molecular Dynamics - WAMD, Santiago de Chile, Nov
9-10, 2015.
- Jaramillo-Botero, A., "Quantum Electron
Dynamics of Large--Scale, Highly-Excited Systems using the Gaussian
Hartree Approximated eFF kernel (eFF-GHA)", Invited Talk, 2015 LAMMPS
Users' Workshop and Symposium, Albuquerque, NM, United States, August
5-7, 2015
- United States Patent No. US
9,090,936 B2 (July 28, 2015): "Using a Field
Effect Device for Identifying Translocating Charge-Tagged Molecules in A
Nanopore Sequencing Device"
- Fortunelli, A., Goddard III, W.A., Sementa, L., Barcaro, G., Negreiros, F.R., Jaramillo-Botero, A., "The atomistic origin of
the extraordinary oxygen reduction activity of Pt3Ni7 fuel cell
catalysts", Royal Society Chem. Sci., DOI:
10.1039/C5SC00840A, 2015
- Xiao, H., Jaramillo-Botero, A., Theofanis, P.L., Goddard III, W.A. "Non-adiabatic dynamics
modeling framework for materials in extreme conditions",
Mechanics of Materials, Elsevier, 10.1016/j.mechmat.2015.02.008, 2015
- United States Patent No. US
8,951,727 B2 (Feb 10, 2015): "Translocation and
Nucleotide Reading Mechanisms for Sequencing Nanodevices"
- An, Q., Jaramillo-Botero, A., Liu,
W.G, Goddard III, W.A. "Reaction Pathways of GaN (0001) Growth from Trimethylgallium and Ammonia
versus Triethylgallium and Hydrazine Using First Principle Calculations",
J. Phys. Chem. C, DOI: 10.1021/jp5116405, February 4, 2015
- Peng, S., Sheldon, M.T, Liu, W.G.,
Jaramillo-Botero, A., Goddard III, W.A., Atwater, H.A., "Ultraviolet Surface
Plasmon-Mediated Low Temperature Hydrazine Decomposition",
Appl. Phys. Lett. 106, 023102 (2015)
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2014
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- Cheng, T., Jaramillo-Botero, A.,
Goddard, W.A., and Sun, H. "Adaptive Accelerated ReaxFF Reactive Dynamics with Validation from
Simulating Hydrogen Combustion", J. Am. Chem. Soc.,
2014, 136 (26), pp 9434-9442
- Jaramillo-Botero, A.
"Progress in Science and Engineering at the Nanoscale",
Keynote speaker (Opening Plenary), Campus Party 2014, Cali, Colombia,
July 1, 2014.
- Jaramillo-Botero, A.,
"Large-scale non-adiabatic dynamics simulation of materials in
extremes" invited plenary, IUTAM Symposium on
Micromechanics of Defects in Solids, Seville, Spain, June
7-9, 2014
- Jaramillo-Botero, A., Invited
keynote speaker, International Centre for Theoretical Physics (ICTP),
Workshop on Advanced Techniques for Scientific Programming and
Management of Open Source Software Packages and LAMMPS Users and
Developers Workshop and Symposium, "Effective Core Pseudo
Potentials for the Electron Force Field (eFF)",
Trieste, Italy, March 10-28, 2014
- Jaramillo-Botero, A., Invited
keynote speaker, International Centre for Theoretical Physics (ICTP),
Workshop on Advanced Techniques for Scientific Programming and
Management of Open Source Software Packages and LAMMPS Users and
Developers Workshop and Symposium, "GARFfield: A Hybrid Evolutionary
and Gradient-based Multi-objective Optimization Scheme for Force Field
Development Coupled to LAMMPS", Trieste, Italy,
March 10-28, 2014
- Jaramillo-Botero, A., Naserifar, S., and Goddard, W.A. "A General
Multi-objective Force Field Optimization Framework, with Application to
Reactive Force Fields for Silicon Carbide", J. of Chemical
Theory and Computation, 2014, 10(4), pp 1426-1439
- An, Q., Cheng, M.J., Goddard, W.A.
and Jaramillo-Botero, A. "CCl Radicals As a Carbon
Source for Diamond Thin Film Deposition", J. Phys.
Chem. Lett., 2014, 5 (3), pp 481-484
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2013
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- An, Q., Goddard, W.A., Zybin, S., Jaramillo-Botero, A., Zhou, T.T, Highly Shocked Polymer
Bonded Explosives at a Nonplanar Interface: Hot-Spot Formation Leading
to Detonation, J. Phys. Chem. C, 2013, 117 (50), pp
26551-26561
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2012
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- Jaramillo-Botero, A.,
Non-adiabatic dynamics of systems in extreme conditions, invited talk 2012 Exploring the
Physics and Chemistry of Giant Planets on NIF workshop, Dec
7, 2012.
- Jaramillo-Botero, A, Hypervelocity
shock-induced phenomena, Caltech-PSAAP Tri-lab Sponsor Team
(TST) meeting, November 15, 2012
- Jaramillo-Botero, A., Qi, A.,
Cheng, M.J., Goddard, W.A. III, Beegle, L., and Hodyss, R., "Hypervelocity impact
effect of molecules from Enceladus' Plume and Titan's upper atmosphere
on NASA's Cassini Spectrometer from Reactive Dynamics Simulations",
Phys. Rev. Letters (PRL), 109, 213201, 2012. Editor highlighted
article.
- Qi An, Konrad Samwer,
William A. Goddard, William L. Johnson, Andres Jaramillo-Botero, Glenn
Garret, and Marios D. Demetriou, "Predicted Optimum
Composition for Glass Forming Ability of Bulk Amorphous Alloys: Application
to Cu-Zr-Al", J. Phys. Chem. Lett., 3 (21), pp
3143-3148, 2012
- Jaramillo-Botero, A., An, Q., Theofanis, P.L. and William A. Goddard III, Large-Scale Reactive Molecular Simulation of
Hypervelocity Impact of Materials, Procedia Engineering,
Elsevier, Hypervelocity Impact Symposium 2012, Baltimore, MD, Sept. 17,
2012.
- Jaramillo-Botero, A. and Goddard,
W.A. III "Large-Scale Reactive
Simulations of Materials in Extreme Conditions", APS
March Meeting 2012, Focus Session: Simulation of Matter at Extreme
Conditions - Warm Dense Matter, February 28, 2012.
- Jaramillo-Botero, A., Tahir-Kheli, J., von Allmen, P.,
Goddard WA III, "Multiscale,
multiparadigm modeling for nano systems characterization and design",
CRC handbook of Nanoscience, Engineering and Technology, 3rd
ed. Chapter 29. In press (May 2012).
- Liu, L, Jaramillo-Botero, A.,
Goddard, W.A. III, and Huan, S. "Development of a ReaxFF Reactive Force Field for Ettringite and Study
of its Mechanical Failure Modes from Reactive Dynamics Simulations",
J. Phys. Chem. A, 2012,
116 (15), pp 3918-3925.
- Theofanis, P.L, Jaramillo-Botero, A.,
Goddard, W.A. III, Mattsson, T., Thompson, A.
"Electron dynamics of
shocked polyethylene crystal", Phys. Rev. B 85, 094109
(2012).
- Jaramillo-Botero, A., Nielsen, R.,
Pascal, T., Abrol, R., Mueller, J., and
Goddard, WA III, "First-principles-based
multiscale, multiparadigm molecular methods for describing complex
chemical processes", Topics in Current Chemistry, Volume
307, pages 1-42, (2012). Special issue on Multiscale Molecular Methods
in Applied Chemistry, Ed. Kirchner, B, Vrabec,
J, 307:1-42 (2012).
- Qi, A., Zybin,
S., Goddard, W.A., III, Jaramillo-Botero, A. "Elucidation of the
dynamics of hot spot initiation and chemical reactions at interfaces of
highly shocked materials", Phys. Rev. B, 84 (22), 2011.
- Theofanis, P.L, Jaramillo-Botero, A.,
Goddard, W.A. III, "Non-adiabatic study of
dynamic electronic effects during brittle fracture in silicon",
Phys. Rev. Lett. 108, 045501, 2012.
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2011
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- Jaramillo-Botero, A.
"Modeling and simulation of large-scale reactive systems in extreme
conditions", invited talk HPC User Forum,
San Diego, September 7, 2011.
- Jaramillo-Botero, A., Cheng, MJ,
Beegle, L., Hodyss, R., Goddard, WA III.
"Predicting the molecular composition of Enceladus' south pole
plume after hypervelocity impact with the Cassini orbiter", 42nd Lunar and
Planetary Science Conference, March 7-11, 2011,
Texas.
- Jaramillo-Botero A, Su J, Qi A, Goddard WA III, "Large-scale, long-term
nonadiabatic electron molecular dynamics for describing material
properties and phenomena in extreme environments". J Comput Chem, 32 (3). pp 497-512, February, 2011
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2010
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- "First-principles-based
characterization and optimization of mechanical strength in
polymer-based hydrogel networks for tissue engineering", invited
seminar, University of California San Diego, Department of Mechanical
and Aerospace Engineering, Nov. 8, 2010.
- "The Caltech-KAIST
collaboration on energy environment water sustainability", Caltech Sustainable
Energy and Infrastructure Forum, Pasadena, California,
Sept.16, 2010.
- "Multiscale Modeling of
Materials with Applications to Electrochemical Properties for Batteries
and Fuel Cells, and to Material Subjected to Extreme Environments",
Invited talk U.S. Army Research Laboratory (ARL), Multi-Scale Multi-Disciplinary Modeling of
Electronic Materials Workshop, Fairfax, Virginia, Sept. 2-3,
2010.
- Jaramillo-Botero,
A., Blanco, M, Li, Y. and
Goddard III, W.A. "First-Principles-based
Approaches to Nano-Mechanical and Biomimetic Characterization of
Polymeric Hydrogel Networks for Cartilage Scaffold-supported Therapies",
special issue of Journal of Computational and Theoretical Nanoscience, Materiomics: properties of Biological and de Novo
Bioinspired Materials, 7, 1238-1256 (2010).
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2009
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Lucas
(2/13/2009)
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2008
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- Jaramillo-Botero, A., Abrol, R., van Duin, A.
and Goddard III, W.A. "Multiscale-Multiparadigm
Modeling and Simulation of Nanometer Scale Systems and Processes for
Nanomedical Applications", invited Book chapter,
Nanomedicine: A Systems Engineering Approach, Pan Stanford Publishing
(World Scientific), Nov. 2008.
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2007
|
- "First-principles based
multiparadigm, multiscale modeling and simulation", Invited Plenary
at the II Colombian Computation Congress, April 20-22, Bogota, Colombia.
- "Computational Nanotechnology
in Predicting Bio-Material Properties", Invited Plenary at the
Converging Technologies Forum 2007: NBICs Health and Society, January
25-26, Barcelona, Spain.
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2006
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2005
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o (Text Book) Computational Robotics: theory and
algorithms for control and simulation (Spanish). Available for registered
undergraduate/graduate students by request. See sample Chapters:
o Mathematical foundations,
o Spatial Transformations.
o Kinematics,
o Dynamics,
o Trajectory Planning,
o Control and Simulation.
o Ramos, N., Jaramillo-Botero, A. "Reduced
Dynamics Complexity of Robot Manipulators via Tensor Analysis of its Joint
Space Mass Operator," Epiciclos, Vol 4, No. 1,
December 2005
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2004
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- Jaramillo-Botero, A. "Molecular
Nanomanipulator Dynamic Design Criteria", Dekker
Encyclopedia of Nanoscience and Nanotechnology. 1st Ed. New York :
Marcel Dekker Publ., 2004.
- Jaramillo-Botero, A., Matta, A.,
Correa, JF, Perea, W. Software platform for
robot modeling and simulation, Vol. 3, No. 1, December 2004.
- "Computational Nanotechnology
in the Design of Nanoscale Molecular Positional Devices", NASA Jet
Propulsion Laboratory Seminar, Pasadena, California (US) November 23,
2004.
- "Molecular Nanotechnology: A
Computational Approach", Plenary II IEEE International Congress for
the Andean Region (Andescon 2004), Bogota
(Colombia), September 2004.
Tomas (2/9/2004)
- "Design Criteria for a 3
DOF positional nanomanipulator based on a Constrained Molecular Dynamics
Model", Nanoscale Science and Engineering 2004 Reunion
Conference, Institute of Pure and Applied Mathematics, University of
California at Los Angeles, Lake Arrowhead Conference, California (US)
January 2004.
- "How to build a Beowulf
Cluster for Scientific Computation", Computational Nanotechnology and Molecular
Eng. Workshop, Caltech, Pasadena, California (US) January
2004.
- "Massively Parallel Molecular
Dynamics (O(log2))", Computational
Nanotechnology and Molecular Eng. Workshop, Caltech,
Pasadena, California (US) January 2004.
- "Rigid Body Manipulator
Design Criteria for Simplified Dynamics", Computational Nanotechnology and Molecular
Eng. Workshop, Caltech, Pasadena, California (US) January
2004.
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2003
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- "Molecular Mechanosynthesis", Plenary VI National Congress
of the Sugar Cane Technical Association Congreso,
Cali, Colombia, 2003.
- "Nanoscale Manipulator Design
Criteria", Computational Nanotechnology Session, Proceedings
American Chemical Society (ACS) National Meeting (invited talk), New
Orleans, Louisiana, March 23-27, 2003.
- "Nanoscale Molecular
Manipulator Design Criteria for Reduced Constrained Dynamics"
(Nanotechnology session) The 7th World Multiconference on Systemics,
Cybernetics and Informatics (invited talk), Orlando, Florida, 2003.
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2002
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- Jaramillo-Botero, A. and
Crespo, A. "A Unified Formulation
For Massively Parallel Rigid Multibody Dynamics Of O(Log2 N)
Computational Complexity", Journal of Parallel and
Distributed Computing, Academic Press, Vol. 62, No. 6, June 1, 2002.
- Jaramillo-Botero, A., "Nanotechnology:
scientific and engineering principles", (Spanish), Science and
Innovation Magazine, ACAC (Colombian Association for the Advancement of
Science), Vol. 10, No. 2, August, 2002.
- Jaramillo-Botero, A., "Design
Theory of Reduced Complexity Robotic Manipulators", Epiciclos (Spanish Journal), Vol. 1, No.1, 2002.
- "Massively Parallel
Constrained Dynamics for MD Simulation", NANO Seminar Series,
Institute of Pure and Applied Mathematics, UCLA, Los Angeles, California
(US), 2002.
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2000
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Lucas
(1/17/2000)
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1998
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- Fijany, A., Jaramillo-Botero, A., Cagin, T., and Goddard, W.A. III, "A Fast
Algorithm for Massively Parallel, Long Term Simulations of Complex
Molecular Dynamics Systems", pp 505-515 (1998), Parallel Computing:
Fundamentals, Applications and New Directions, Eds. E. H. D'Hollander, G. R. Joubert, F. J. Peters and U. Trottenberg.
- Fijany, A., Cagin,
T., A., Jaramillo-Botero, and Goddard, W. A. III. Novel Algorithms for
massively parallel, long term simulation of molecular dynamics systems,
Advances in Engineering Software, 29, 441-450 (1998).
- Cagin, T., Jaramillo-Botero, A., Gao,
G., W. A. Goddard, III, Molecular Mechanics and
Molecular Dynamics Analysis of Drexler-Merkle Gears and Neon Pump,
Nanotechnology 9 (3), 143-152 (1998).
- Massively Parallel Algorithms for
Long-term Simulations of Large-scale Molecular Systems, Universidad Politecnica de Valencia, Doctoral Thesis, (spanish) ISBN: 958-8162-60-2, 1998.
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1997
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- Fijany, A., T. Cagin,
A. Jaramillo-Botero, S. Gulati, and W.A. Goddard,"Novel
Algorithms for Massively Parallel, Long-Term, Simulation of Molecular
Dynamics Systems," 4th NASA National Symposium on Large-Scale
Analysis and Design on High-Performance Computers and Workstation,
Williamsburg, VA, October 1997.
- Fijany, A., T. Cagin,
A. Jaramillo-Botero, and W.A. Goddard, "Massively Parallel
Constraint Force Algorithm for MD Simulation of Polymers and
Dendrimers," Presented at the 1997 American Physical Society (APS)
Int. Conf. on Computational Physics (PC97), Santa Cruz, CA, Aug. 1997.
- Fijany, A. A. Jaramillo -Botero, T. Cagin, and W.A. Goddard, "A Fast Algorithm for
Massively Parallel, Long-Term, Simulation of Complex Molecular Dynamics
Systems," Proceedings Parallel Computing 97 (PARCO 97), Bonn,
Germany, September 1997.
- Fijany, A., T. Cagin,
A. Jaramillo -Botero, T. Coley, and W.A. Goddard, "A Massively
Parallel Algorithm for Solution of Constrained Equations of Motion with
Application to Large-Scale Long-Time Molecular Dynamics
Simulations," Presented at the 2nd Parallel Computational Chemistry
Symposium, American Chemistry Society (ACS), San Francisco, CA,
April 1997.
- Fijany, A., T. Cagin,
A. Jaramillo -Botero, and W.A. Goddard,"A
Massively Parallel Algorithm for Solution of Constrained Equations of
Motion in Molecular Dynamics," Presented at the American Physical
Society Meeting, Kansas City, MO, March 1997.
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1996
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o Rigid Multibody Molecular
Dynamics: Strictly Parallel Computations, ISBN: 958-33-4988-7,
TR-RAG-1996 - Robotics and Automation Group (RAG), 1996.
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1995
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- Jaramillo-Botero, A., and Miyake,
Y. "A Parallel Architecture for Achieving High Speed Fuzzy Control
under a PC ISA Platform", Fuzzy IEEE Micro, December 1995.
- Jaramillo-Botero, A., and Miyake,
Y. "Neuro-Fuzzy Perception and Control for Robots". Proceedings
11th ISPE/IEE/IFAC/ International Conference on CAD/CAM, Robotics, &
Factories of the Future, November 1995.
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- 1995
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- Jaramillo-Botero, A.
"Computational Intelligence: Introduction and Applications in
Vision and Senso-Motor Control", (Spanish) Colombia, Science and
Technology Magazine, Vol. 12 No. 4, October-December, 1994.
- Jaramillo-Botero, A., and Miyake,
Y. "A High Speed Parallel Architecture for Fuzzy Inference and
Fuzzy Control of Multiple Processes". Proceedings IEEE World
Congress on Computational Intelligence. USA. June 1994.
- Jaramillo-Botero, A.
"Artificial Neural Networks and Fuzzy Logic in Industrial
Applications". Proceedings 1st National Symposium on Automation,
Cali, Colombia, November 1993. (plenary).
- Jaramillo-Botero, A., and Kazuo,
K. "A Fuzzy Artificial Neural Network for Pattern
Classification". Presented at the 1st IS&T Color Imaging
Conference. Phoenix, Arizona, USA. November 1993.
- RISCy Processing Element for Loosely Coupled
Multiprocessor Systems. State University of New York, Master's Thesis,
Binghamton, 1989.
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